Basic Information
VIS ID
TVIS30011768
Fusion event
HIV-ANKS1B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
99874625/99480847 (Hg38)
End
99874625/99480847 (Hg38)
Orient
-
Location type
Intronic
Target gene
ANKS1B
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-let-7i/Upstream/1485399; hsa-mir-1178/Downstream/709037;
Nearest TSS
ENST00000382841/Upstream/94550; ENST00000324341/Downstream/166906;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/585251, chr12-CpG: 85/Downstream/503618
Upstream sequence
ttaattgaagagcttttggttgtttttggcaaaatatcttcattagttttttcctcaaattttctagcaaaattttcattactgaaattacttcttttac
Downstream sequence
cagatctcacttaaaatgttcttccctttgtttggaacctaatccattttatagctggcaaaaattacaagctcaaatccttccaaaaattgtttttata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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