Basic Information
VIS ID
TVIS30011772
Fusion event
HIV-LOC101929162 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
108152678/107758901 (Hg38)
End
108152678/107758901 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC101929162
Nearest miRNA
hsa-let-7i/Upstream/3167185; hsa-mir-1178/Downstream/876909;
Nearest TSS
ENST00000382841/Upstream/7126; ENST00000342331/Downstream/2027;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/72785, chr12-CpG: 79/Downstream/1716
Upstream sequence
AATGTAAAAGGCCAACCTAGTACCTTGTATAGAACAGACATTCTGAATTTTCTTATTTTATCGGATGGAGCTATGCAAACTCATCACCCTTACCAGAAAG
Downstream sequence
ACAGCTAGAAGCACCTGGCAAATGAGGTACACCTTATGAAGAACAGCATGCTAATAACAGTTTTTATTATGCTATAAAATAAAGCAGCccaggtgtggtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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