VISDB Viral Integration Site DataBase

VIS ID

TVIS30011776

Fusion event

HIV-PPTC7 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.11

Reference genome

Start

End

110983090/110545285 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-744-5p ; hsa-mir-26b-5p ; hsa-mir-18a-3p ; hsa-mir-15b-5p ; hsa-mir-93-5p ; hsa-mir-4706 ; hsa-mir-4749-5p ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-4327 ; hsa-mir-570-3p ; hsa-mir-4496 ; hsa-mir-8066 ; hsa-mir-510-3p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-2116-3p ; hsa-mir-100-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-4660 ; hsa-mir-4709-5p ; hsa-mir-646 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-8485 ; hsa-mir-329-3p ; hsa-mir-548e-5p ; hsa-mir-421 ; hsa-mir-2113 ; hsa-mir-548aw ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-873-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-4258 ; hsa-mir-4672 ; hsa-mir-6768-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-1228-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-5008-5p ; hsa-mir-4726-3p ; hsa-mir-383-3p ; hsa-mir-6514-3p ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p

Nearest miRNA

hsa-let-7i/Upstream/711849; hsa-mir-1178/Downstream/758857;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/42917, chr12-CpG: 124/Downstream/37021

Upstream sequence

gggttcaagcgattctcctgcctcagcctcctgagtagctgggactacaggcgcccgccatcacgcccagctaatttttgcatttttagtagagatgggg

Downstream sequence

tttcaccatgttggccaagctggtcttgaactcctggcctcaagtgatccacccgcctcagcctcccaaagtcctgggattacaggcgtgagtcaccgtg