VISDB Viral Integration Site DataBase

VIS ID

TVIS30011791

Fusion event

HIV-KSR2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.22

Reference genome

Start

End

118094695/117656890 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA12E ; FRA12C

Target gene

miRNAs that regulate target gene

hsa-mir-940 ; hsa-mir-7847-3p ; hsa-mir-6894-5p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-4751 ; hsa-mir-766-5p ; hsa-mir-139-5p ; hsa-mir-3922-5p ; hsa-mir-5582-5p ; hsa-mir-2113 ; hsa-mir-218-5p ; hsa-mir-7106-3p ; hsa-mir-361-3p ; hsa-mir-6793-3p ; hsa-mir-483-3p ; hsa-mir-4700-3p ; hsa-mir-642a-5p ; hsa-mir-1236-3p ; hsa-mir-4469 ; hsa-mir-6515-3p ; hsa-mir-2276-5p ; hsa-mir-5188 ; hsa-mir-1243 ; hsa-mir-3654 ; hsa-mir-6892-3p ; hsa-mir-4732-5p ; hsa-mir-6832-5p ; hsa-mir-7107-3p ; hsa-mir-6753-3p ; hsa-mir-20b-3p ; hsa-mir-3137 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-6739-3p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-607 ; hsa-mir-511-5p ; hsa-mir-6888-3p ; hsa-mir-6715b-3p ; hsa-mir-6830-3p ; hsa-mir-3120-5p ; hsa-mir-4732-3p ; hsa-mir-6732-3p ; hsa-mir-6715a-3p ; hsa-mir-1324

Nearest miRNA

hsa-let-7i/Upstream/1228572; hsa-mir-1178/Downstream/2056744;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/295247, chr12-CpG: 50/Downstream/104072

Nearest cancer related gene

KSR2(OG, No orient, 0)

Upstream sequence

tattagactctaagttcttcagttctgggactcagactggctctccttgctcctcagcttgcagacagcctattgtaggaccttgtgatcatgtaagtta

Downstream sequence

atacttaataaactcccctttgtgtgtgtgtgtatacatatatataataggatatatatatatatataataggatatatatatataataggatatatata