VISDB Viral Integration Site DataBase

VIS ID

TVIS30011801

Fusion event

HIV-SETD1B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

122269423/121831517 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-151a-5p ; hsa-mir-7-5p ; hsa-mir-103a-3p ; hsa-mir-27a-3p ; hsa-mir-16-5p ; hsa-mir-484 ; hsa-mir-222-3p ; hsa-mir-197-3p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-mir-15a-5p ; hsa-mir-107 ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-513a-5p ; hsa-mir-1179 ; hsa-mir-4310 ; hsa-mir-4524a-5p ; hsa-mir-4524b-5p ; hsa-mir-6077 ; hsa-mir-6838-5p ; hsa-mir-7157-5p ; hsa-mir-412-3p ; hsa-mir-6759-5p ; hsa-mir-6796-5p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-4758-5p ; hsa-mir-1238-5p ; hsa-mir-127-5p ; hsa-mir-6793-5p ; hsa-mir-6748-5p ; hsa-mir-6742-5p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-3151-5p ; hsa-mir-491-5p ; hsa-mir-92a-1-5p ; hsa-mir-4455 ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6835-5p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-4764-5p ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-299-3p ; hsa-mir-590-5p ; hsa-mir-21-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-920 ; hsa-mir-5591-5p ; hsa-mir-6726-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-6081 ; hsa-mir-4660 ; hsa-mir-4485-5p ; hsa-mir-3193 ; hsa-mir-6886-5p ; hsa-mir-646 ; hsa-mir-1273h-3p ; hsa-mir-296-5p ; hsa-mir-744-5p ; hsa-mir-4749-3p ; hsa-mir-4771 ; hsa-mir-3166 ; hsa-mir-6859-3p ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-3158-5p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6892-3p ; hsa-mir-27b-3p ; hsa-mir-6089 ; hsa-mir-503-5p ; hsa-mir-1233-5p ; hsa-mir-1253 ; hsa-mir-1289 ; hsa-mir-185-5p ; hsa-mir-1915-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3121-5p ; hsa-mir-3913-3p ; hsa-mir-4306 ; hsa-mir-4524a-3p ; hsa-mir-4644 ; hsa-mir-4685-5p ; hsa-mir-4726-3p ; hsa-mir-489-3p ; hsa-mir-501-5p ; hsa-mir-5197-3p ; hsa-mir-541-3p ; hsa-mir-5588-3p ; hsa-mir-654-5p ; hsa-mir-6719-3p ; hsa-mir-6731-5p ; hsa-mir-6746-5p ; hsa-mir-6764-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6771-5p ; hsa-mir-6778-5p ; hsa-mir-6788-5p ; hsa-mir-6804-5p ; hsa-mir-6837-5p ; hsa-mir-6840-3p ; hsa-mir-6878-5p ; hsa-mir-8069 ; hsa-mir-8085 ; hsa-mir-92a-2-5p

Nearest miRNA

hsa-let-7i/Upstream/387165; hsa-mir-3612/Downstream/864390;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/3469, chr12-CpG: 23/Downstream/7878

Upstream sequence

CCCTTCCCATCTCTTCAGAATTTATTCCCATGGCTTTTTTTTTTCTTGTGCGTGTATAAAATCAAAAGGAAGGGGAAAAAGGTTTTTGAAGTTCAGAACC

Downstream sequence

AACTTCTGTATATAGAGGCTGCCGCAAAGGACTTTCTCTTGGGAACATTGTTTCTTGTAGAAACATGCGGGAAGACATTTTTTGCTCATTTCTTTGTACT