VISDB Viral Integration Site DataBase

VIS ID

TVIS30011812

Fusion event

HIV-SBNO1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

123781117/123296570 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-188-5p ; hsa-mir-218-5p ; hsa-mir-196a-5p ; hsa-mir-450b-5p ; hsa-mir-153-5p ; hsa-mir-4659a-5p ; hsa-mir-4659b-5p ; hsa-mir-5590-5p ; hsa-mir-4776-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-4776-5p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-4800-5p ; hsa-mir-3138 ; hsa-mir-3619-3p ; hsa-mir-3663-5p ; hsa-mir-6131 ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-1911-3p ; hsa-mir-374b-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-922 ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-32-3p ; hsa-mir-548av-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-15b-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-6838-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-5089-5p ; hsa-mir-6807-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-4433b-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-520d-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-520b ; hsa-mir-372-3p ; hsa-mir-520e ; hsa-mir-520c-3p ; hsa-mir-373-3p ; hsa-mir-520a-3p ; hsa-mir-302a-3p ; hsa-mir-129-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-4524a-3p ; hsa-mir-4328 ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-4674 ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-4437 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-4634 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-378g ; hsa-mir-4486 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-5693 ; hsa-mir-1298-3p ; hsa-mir-1184 ; hsa-mir-1205 ; hsa-mir-1207-5p ; hsa-mir-127-5p ; hsa-mir-17-3p ; hsa-mir-1909-3p ; hsa-mir-1914-3p ; hsa-mir-3154 ; hsa-mir-3158-5p ; hsa-mir-3173-3p ; hsa-mir-3179 ; hsa-mir-3942-5p ; hsa-mir-4270 ; hsa-mir-4271 ; hsa-mir-4434 ; hsa-mir-4436b-3p ; hsa-mir-4441 ; hsa-mir-4516 ; hsa-mir-4527 ; hsa-mir-4533 ; hsa-mir-4632-5p ; hsa-mir-4685-5p ; hsa-mir-4703-5p ; hsa-mir-4725-3p ; hsa-mir-4747-5p ; hsa-mir-4763-3p ; hsa-mir-4779 ; hsa-mir-5194 ; hsa-mir-5196-5p ; hsa-mir-5703 ; hsa-mir-6132 ; hsa-mir-6503-5p ; hsa-mir-6721-5p ; hsa-mir-6722-3p ; hsa-mir-6735-5p ; hsa-mir-6738-5p ; hsa-mir-6754-5p ; hsa-mir-6760-5p ; hsa-mir-6770-5p ; hsa-mir-6780b-5p ; hsa-mir-6783-5p ; hsa-mir-6823-5p ; hsa-mir-6836-5p ; hsa-mir-6837-5p ; hsa-mir-6878-5p ; hsa-mir-6879-5p ; hsa-mir-6891-5p ; hsa-mir-7843-3p ; hsa-mir-7843-5p

Nearest miRNA

hsa-let-7i/Upstream/285842; hsa-mir-3612/Downstream/68194;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/24462, chr12-CpG: 124/Downstream/67500

Upstream sequence

GGGTGCTGGTTAAGGGAACTTTAAGTCCTGCATGTAGGATTGAAGGCTCAATGTTCCAGATAAATTGCATGCATATATATATGTGtttttttttttgttt

Downstream sequence

tttttttctgagatggagtattgctctgtcgccaggctggagtgcagtggcacaatcttggctcattgcaacctccgcctcccgggttgaagtgattctc