Basic Information
VIS ID
TVIS30011813
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.32
Reference genome
GRCh37/hg19
Start
127479111/126994566 (Hg38)
End
127479111/126994566 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA12E
Nearest miRNA
hsa-let-7i/Upstream/2078907; hsa-mir-3612/Downstream/1299526;
Nearest TSS
ENST00000382841/Upstream/119745; ENST00000617117/Downstream/65783;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/266583, chr12-CpG: 78/Downstream/151400
Upstream sequence
ttgaacccagggcgcggaggttgcagtgaggtgagatcgcaccactttactccggcctgggcgaaagaacaaaactctgtctcaaataagtaagtaaata
Downstream sequence
aatatagggaagccgacagtgcagccttcagccggtggctgaaggaccaggggctcctggcaagttaccattgtaagtccaagagtccaaaagctgaaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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