Basic Information
VIS ID
TVIS30011830
Fusion event
HIV-DNAJC15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q14.11
Reference genome
GRCh37/hg19
Start
43635039/43060903 (Hg38)
End
43635039/43060903 (Hg38)
Orient
-
Location type
Intronic
Target gene
DNAJC15
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-8068 ; hsa-mir-5087 ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-5580-3p ; hsa-mir-5589-3p ; hsa-mir-574-5p ; hsa-mir-135b-3p ; hsa-mir-4278 ; hsa-mir-6867-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-625-5p ; hsa-mir-6732-5p ; hsa-mir-6805-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-129-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p
Nearest miRNA
hsa-mir-2276/Upstream/1492508; hsa-mir-1267/Downstream/1135226;
Nearest TSS
ENST00000623511/Upstream/37700; ENST00000425609/Downstream/97728;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/37183, chr13-CpG: 159/Downstream/724995
Upstream sequence
caaactgaggaattatgtctgacagaagggaagaaatgactgcggtggtcttctcagatcctgtgggaaaggcctctacccacccagtgaaagtgtctac
Downstream sequence
ccagaccaagaggtattttagtttcctgacatgtgagtaaagtcaatttgccagtcctgggcaggggcaaatccctgagcttgttgtgtagggaagggat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate