Basic Information
VIS ID
TVIS30011841
Fusion event
HIV-PIBF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
73405908/72831770 (Hg38)
End
73405908/72831770 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13B
Target gene
PIBF1
Nearest miRNA
hsa-mir-1297/Upstream/6613446; hsa-mir-1267/Downstream/4866242;
Nearest TSS
ENST00000623511/Upstream/33861; ENST00000486330/Downstream/52674;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/49296, chr13-CpG: 163/Downstream/226952
Upstream sequence
tgttttacttcctattatgtggtcagttttagagtgagtgtgatgaggtgctgttgatttgggtggagagttctgtaatgtctattaggtctgcttggtc
Downstream sequence
cagatctgagttcaagtcctgaatatccttgttaattttctgtctcattgatctatctaatattgacagcggggtgttaaagtttcccaccattattgta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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