Basic Information
VIS ID
TVIS30011843
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
75553724/74979587 (Hg38)
End
75553724/74979587 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA13E
Nearest miRNA
hsa-mir-1297/Upstream/8761263; hsa-mir-1267/Downstream/2718425;
Nearest TSS
ENST00000623511/Upstream/423051; ENST00000434832/Downstream/270893;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/843906, chr13-CpG: 197/Downstream/501129
Nearby gene
CTAGE11P(No orient, 258165)
Upstream sequence
CATTATCTATACAATCATCAAAGCTATCAATACTGCTATATTTAAGCATATCAAAAATTTATTTATGTGGAAAACAGAAGCCATATTTTACCTTGGTATC
Downstream sequence
TAGATCTCTTTTGGTAGAGGAAGAAGGTGCATTTTTTCATATCTTGATAAGATTTCAATACTCAAATCGTGATAAAATCTCAACTACTACTCTTATACTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate