Basic Information
VIS ID
TVIS30011854
Fusion event
HIV-chr13 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
103782148/103129798 (Hg38)
End
103782148/103129798 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1297/Upstream/1083794; hsa-mir-1267/Downstream/4401373;
Nearest TSS
ENST00000623511/Upstream/62952; ENST00000444795/Downstream/295402;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/283385, chr13-CpG: 29/Downstream/3363262
Nearby gene
SLC10A2(No orient, 62952)
Upstream sequence
gacttgcagtgagccacaccattttccctggttctccagcttgcagatggtgtatcgggggacttagtctccataatctagtgagccaattctcctaata
Downstream sequence
aagatcttcttatatctctctctatatatgctattaataacgtctctgaggagaactctgactaaagaggtagatactattactctgcacatattagaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate