Basic Information
VIS ID
TVIS30011857
Fusion event
HIV-DCUN1D2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
114118063/113463748 (Hg38)
End
114118063/113463748 (Hg38)
Orient
+
Location type
Intronic
Target gene
DCUN1D2
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-26b-5p ; hsa-mir-191-5p ; hsa-mir-373-5p ; hsa-mir-616-5p ; hsa-mir-371b-5p ; hsa-mir-1228-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6778-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-6747-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p
Nearest miRNA
hsa-mir-1267/Upstream/200749; hsa-mir-4502/Downstream/780757;
Nearest TSS
ENST00000623511/Upstream/660; ENST00000414992/Downstream/5153;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/21746, chr13-CpG: 135/Downstream/26415
Upstream sequence
CTCTATTAGGTTAACCGTTAGTTAAGAGTAAAGCATCATCTTACATAAAAACAATACAGTACAATCTTcacacacacagatacacatagacacacacaga
Downstream sequence
tacccacaaagagacacagacacacacagacacacacagagacacacagacatatataaacagacacaaacacacacacagacacagacacaAAGGAAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate