Basic Information
VIS ID
TVIS30011867
Fusion event
HIV-TRA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
22533701/22065437 (Hg38)
End
22533701/22065437 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRA
Nearest miRNA
hsa-mir-6717/Upstream/1042051; hsa-mir-1185-1/Downstream/891513;
Nearest TSS
ENST00000550708/Upstream/12923; ENST00000390450/Downstream/5120;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/553880, chr14-CpG: 40/Downstream/523578
Nearby gene
OR4E1(No orient, 394469)
Upstream sequence
atttttgtacccagttttattcttatttttatgttattctttttaaaatcctccatcttgtaagtttcaggcttacaaacataaatcctcctttgTACAT
Downstream sequence
TATCATAAATCTTTGAAATTCAACACTAGAAGGGCAGGAAGGATGTGGAGGAAGTTCACAAAAATTGTGAATTTCTCTTAGCCCTCTATTTGGCCCCTGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate