Fusion event
HIV-NPAS3 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
33980666/33511460 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-208a/Upstream/2496718; hsa-mir-1185-1/Downstream/3440849;
Upstream sequence
TTCCATCACTTTTGATCCCTTTCGGCAGGTTTCACCAGACAATTCAATTATGAACTGTTTTAGAAAAATTACAATTTAATCAATAAAGAGAAAGGGCCAA
Downstream sequence
ATTTCTAAACAAGATCGAAGGATATAAAACAGCACAAAAATTACCTTTATTTCAAAAGGTACATTTGGTGACATTTTTGGCATGTGGCCGCGCTGTTGTA
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.