Basic Information
VIS ID
TVIS30011878
Fusion event
HIV-MIA2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
39779878/39310674 (Hg38)
End
39779878/39310674 (Hg38)
Orient
-
Location type
Intronic
Target gene
MIA2
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-124-3p
Nearest miRNA
hsa-mir-208a/Upstream/2358283; hsa-mir-1185-1/Downstream/8450321;
Nearest TSS
ENST00000550708/Upstream/34448; ENST00000556593/Downstream/2727;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/42976, chr14-CpG: 127/Downstream/120798
Upstream sequence
agctaaccctgtattacccttaggagcagtgatctagtatttgctaatttacgatgtatagtgactttatggaacaaaactagcacaaataatgagaatc
Downstream sequence
tactTTATCTATTTGGAAACTGgtagagagtactaatgcttctttgagatcaggatgctgggtagtgcttggctcattcactgccaagtTCTGTACTTCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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