Basic Information
VIS ID
TVIS30011881
Fusion event
HIV-chr14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
42044869/41575666 (Hg38)
End
42044869/41575666 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/4623275; hsa-mir-1185-1/Downstream/6185329;
Nearest TSS
ENST00000550708/Upstream/620768; ENST00000553926/Downstream/29190;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/2142664, chr14-CpG: 47/Downstream/30989
Nearby gene
LRFN5(No orient, 31895)
Upstream sequence
TACACTCCTATTGTGTCTATTTACTTAAGATACAGGGGCTGATAGGAGCATTTTTCCTTGGACCTTACAATCTCTAAACCAACTAACTCCCAAGTAAATG
Downstream sequence
AAAAGCAGTTTttttgttttgttttgttttgtttGCCAACAGGTCATGATATATATGAGTGAGAGATACCACCTCTATTTCTACCTTTTATTTTCAAACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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