Basic Information
VIS ID
TVIS30011882
Fusion event
HIV-PRPF39 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
45570108/45100905 (Hg38)
End
45570108/45100905 (Hg38)
Orient
-
Location type
Intronic
Target gene
PRPF39
miRNAs that regulate target gene
hsa-mir-21-5p
Nearest miRNA
hsa-mir-208a/Upstream/8148514; hsa-mir-1185-1/Downstream/2660090;
Nearest TSS
ENST00000550708/Upstream/3999; ENST00000556718/Downstream/8827;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/137993, chr14-CpG: 46/Downstream/33265
Upstream sequence
ATTTTTCCTTAATGTGCTTCTGTTTTAATTCTTACTGGTTCCTGAGTTTTGTGCCTATTTTACCAAAAATATATAAATCCTGTATTTTGTTCTAACTTTT
Downstream sequence
CTATAGTTTTTTGCTTATTCATTTATCTGAATTTAATTTCTATCTGTCGTGAGATAGACATTAGCCTTTTAtatactcccactgttgaattaaagtatct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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