Basic Information
VIS ID
TVIS30011884
Fusion event
HIV-NEMF integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
50295134/49828416 (Hg38)
End
50295134/49828416 (Hg38)
Orient
+
Location type
Intronic
Target gene
NEMF
miRNAs that regulate target gene
hsa-mir-16-5p
Nearest miRNA
hsa-mir-208a/Upstream/2067312; hsa-mir-1185-1/Downstream/137983;
Nearest TSS
ENST00000550708/Upstream/2478; ENST00000618845/Downstream/848;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/59596, chr14-CpG: 25/Downstream/24292
Upstream sequence
GTGTTTTCTTAGCAGCATATCTCTTGTGATCATAATACCTAGAAAAACATATTTCTCTTAAATTTTAAGTATAATATTTATTCTTCAGTTTTCTACTTAG
Downstream sequence
TTCTAACTTGACAAATTCTCAAATTATACAGAACAAATCAGAACAAACTGTATAATTAACAAAACTAAATTTAAAAAAGTATTTTCACCCAAAAAAAGTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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