VISDB Viral Integration Site DataBase

VIS ID

TVIS30011889

Fusion event

HIV-ERO1A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q22.1

Reference genome

Start

End

53115377/52648659 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-let-7b-5p ; hsa-mir-296-3p ; hsa-mir-106b-5p ; hsa-mir-182-5p ; hsa-mir-3653-3p ; hsa-mir-203a-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-4698 ; hsa-mir-4433b-3p ; hsa-mir-548p ; hsa-mir-6821-5p ; hsa-mir-7977 ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-583 ; hsa-mir-6089 ; hsa-mir-4683 ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-494-3p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-4793-5p ; hsa-mir-6890-3p ; hsa-mir-6888-5p ; hsa-mir-6502-3p ; hsa-mir-433-5p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-let-7a-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-2054 ; hsa-mir-338-5p ; hsa-mir-4458 ; hsa-mir-4462 ; hsa-mir-4500 ; hsa-mir-582-5p ; hsa-mir-6504-3p

Nearest miRNA

hsa-mir-208a/Upstream/2348713; hsa-mir-1185-1/Downstream/1299768;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/95163, chr14-CpG: 97/Downstream/46461

Upstream sequence

cttttaaagtgttactaaatgcatggtggctttttggcaatcatattttcaaaatcaacagatactaaaaatactctgtcatgagaagaggccttgaaag

Downstream sequence

ttcctgagtataagagactcccatacttgtgagagttggaagcctctgTTCTAAAAGACTGTGCTTGCTTTTGTAGACGCTAATTTCAATGTTTGCTTCT