Basic Information
VIS ID
TVIS30011894
Fusion event
HIV-SGPP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
64182882/63716164 (Hg38)
End
64182882/63716164 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA14B
Target gene
SGPP1
miRNAs that regulate target gene
hsa-mir-128-3p ; hsa-mir-215-5p ; hsa-mir-34a-5p ; hsa-mir-192-5p ; hsa-mir-92b-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-208a/Upstream/3067453; hsa-mir-1185-1/Downstream/378860;
Nearest TSS
ENST00000550708/Upstream/74021; ENST00000556725/Downstream/11875;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/73930, chr14-CpG: 82/Downstream/11359
Upstream sequence
atacaacaaaatccaaaactgtaaaaattaccaagcaaggaattaggaaaatatgatctataatcaggagaaataatagaaacacacaaagatgacaaag
Downstream sequence
atgatggaattagaagataaataccttaagattgctataaaacatcttataAATTGGCTGGGCAAGGTActgtaatcccagcactttgggaaacgggggt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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