Basic Information
VIS ID
TVIS30011895
Fusion event
HIV-MIR548AZ integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
64833605/64366887 (Hg38)
End
64833605/64366887 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA14B
Target gene
MIR548AZ
Nearest miRNA
hsa-mir-208a/Upstream/271762; hsa-mir-1185-1/Downstream/418739;
Nearest TSS
ENST00000550708/Upstream/14603; ENST00000554739/Downstream/21144;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/27820, chr14-CpG: 69/Downstream/20598
Upstream sequence
gacaataaatgatttctttttttttcttctgaaaccatgtttatttcatcttcaatttttttttttttttttttttttttttgagacggagtctcactct
Downstream sequence
cgcccaggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcctgggttcacgccattctcccgcctcagcctcccgagtagctgggac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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