Basic Information
VIS ID
TVIS30011910
Fusion event
HIV-SIPA1L1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
72075271/71608554 (Hg38)
End
72075271/71608554 (Hg38)
Orient
+
Location type
Intronic
Target gene
SIPA1L1
miRNAs that regulate target gene
hsa-mir-92a-3p ; hsa-mir-4531 ; hsa-mir-5581-3p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-539-5p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p
Nearest miRNA
hsa-mir-208a/Upstream/4166624; hsa-mir-1185-1/Downstream/908266;
Nearest TSS
ENST00000550708/Upstream/10320; ENST00000555066/Downstream/10202;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/287046, chr14-CpG: 114/Downstream/323393
Upstream sequence
ATTTAGATGTTAATTTTTTTTCCTAAGCTAATGTTTGAATTGGTATTAACATTAAAAATAAAAAGTTGCATTAATATGCAACTTTTAAACATACTCTTTA
Downstream sequence
TAGTCATTGACCATTTGCAAACCAAATGCATTTTTTATACTTAAAAAAAAGAAATCTTCTggccaggcacggtggctcatgtctgtagtcccagcacttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate