Basic Information
VIS ID
TVIS30011920
Fusion event
HIV-TTC7B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.11
Reference genome
GRCh37/hg19
Start
91140072/90673728 (Hg38)
End
91140072/90673728 (Hg38)
Orient
-
Location type
Intronic
Target gene
TTC7B
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-9-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1260a/Upstream/13407438; hsa-mir-1185-1/Downstream/3274498;
Nearest TSS
ENST00000550708/Upstream/15710; ENST00000554967/Downstream/1390;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/52276, chr14-CpG: 32/Downstream/84757
Upstream sequence
TTAAAATCCAGTTATCCtcacaacaacactgttcatagtagccaaaaggtagaaacaacccacatttccatcagctaatgaatggaaaaacaaattgtgg
Downstream sequence
tagatctgtacaacggaatactattcagccataaaaagaaatattgatccatgttataatgtggataaccttgaaaacattatgctatgtgaaagaagcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate