VISDB Viral Integration Site DataBase

VIS ID

TVIS30011921

Fusion event

HIV-RPS6KA5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr14

Cytoband

q32.11

Reference genome

Start

End

91435123/90968779 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148a-3p ; hsa-mir-128-3p ; hsa-mir-101-3p ; hsa-mir-27a-3p ; hsa-mir-744-5p ; hsa-mir-93-5p ; hsa-mir-19a-3p ; hsa-mir-4437 ; hsa-mir-24-3p ; hsa-mir-4635 ; hsa-mir-5088-5p ; hsa-mir-548n ; hsa-mir-1-5p ; hsa-mir-340-5p ; hsa-mir-142-5p ; hsa-mir-5590-3p ; hsa-mir-526b-3p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-664a-3p ; hsa-mir-6504-3p ; hsa-mir-5586-3p ; hsa-mir-376c-3p ; hsa-mir-301b-3p ; hsa-mir-454-3p ; hsa-mir-301a-3p ; hsa-mir-3666 ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-4295 ; hsa-mir-106a-3p ; hsa-mir-6834-5p ; hsa-mir-8077 ; hsa-mir-4663 ; hsa-mir-7160-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-4728-3p ; hsa-mir-4735-3p ; hsa-mir-18b-5p ; hsa-mir-18a-5p ; hsa-mir-548m ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-5003-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-335-3p ; hsa-mir-5096 ; hsa-mir-6083 ; hsa-mir-4446-5p ; hsa-mir-4282 ; hsa-mir-526b-5p ; hsa-mir-5698 ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-143-5p ; hsa-mir-3650 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-129-5p ; hsa-mir-135a-3p ; hsa-mir-153-3p ; hsa-mir-3680-3p ; hsa-mir-448 ; hsa-mir-450b-5p ; hsa-mir-507 ; hsa-mir-557 ; hsa-mir-5584-5p ; hsa-mir-6750-5p ; hsa-mir-6822-5p ; hsa-mir-9500

Nearest miRNA

hsa-mir-1260a/Upstream/13702489; hsa-mir-1185-1/Downstream/2979447;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/152175, chr14-CpG: 134/Downstream/91110

Upstream sequence

GTTTCAAAGGCAGCAAAATAGCACAAAAACTGCCTCTATGGATCAGCCCAAATTGAGCCCCTCAaaaatggttatgttaacccactgaattttgggttag

Downstream sequence

ttatgcagaaaaagacaactgATATATTAGCAACTTGTAGATCATGCTTATAACttaagtgtcttgttcaagatcacacagttaataaCCAAAACAATCT