Basic Information
VIS ID
TVIS30011925
Fusion event
HIV-TC2N integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.12
Reference genome
GRCh37/hg19
Start
92297541/91831197 (Hg38)
End
92297541/91831197 (Hg38)
Orient
+
Location type
Intronic
Target gene
TC2N
miRNAs that regulate target gene
hsa-mir-9-5p
Nearest miRNA
hsa-mir-1260a/Upstream/14564907; hsa-mir-1185-1/Downstream/2117029;
Nearest TSS
ENST00000550708/Upstream/17369; ENST00000553427/Downstream/5243;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/256665, chr14-CpG: 57/Downstream/4660
Upstream sequence
TCTCTCATACGTTTAGCTTTCTCTTAGATTTTGGCATGTTAATTCCTATCTTTTGAATTGTTTTTTTAAATACAGCATTCTTAGCTGTTCTCAGCTAAGG
Downstream sequence
TTGTCCAATACCTCACAACTTACACTGTTCCCAAAATGCAAATCCTATATTTATTTTTCAAGTTAAAATTAATTCTAGTAAGTTAGGAAAGGATTTGCAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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