Basic Information
VIS ID
TVIS30011929
Fusion event
HIV-LOC107984703 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.13
Reference genome
GRCh37/hg19
Start
96199906/95733569 (Hg38)
End
96199906/95733569 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984703
Nearest miRNA
hsa-mir-1260a/Upstream/595583; hsa-mir-1185-1/Downstream/4375850;
Nearest TSS
ENST00000550708/Upstream/18089; ENST00000554321/Downstream/132836;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/19058, chr14-CpG: 151/Downstream/142303
Nearby gene
TCL1A(No orient, 19373)
Upstream sequence
cagttactgtatctttaaactggggctatttatacctatctcaaggactggtgagggagttagggtatgtcaaactgggagcccagtgccAAGATCTCCT
Downstream sequence
TTAGGAATTACAGCCTGTTGGGGAAATAAGACACATGCTTTGAAACTTAAGCAACCATCttgctggatataaaaccaatatacaaaaaattcaatagtat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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