Basic Information
VIS ID
TVIS30011930
Fusion event
HIV-LOC105370645 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
97141539/96675202 (Hg38)
End
97141539/96675202 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370645
Nearest miRNA
hsa-mir-1260a/Upstream/1537216; hsa-mir-1185-1/Downstream/3434217;
Nearest TSS
ENST00000550708/Upstream/82434; ENST00000556669/Downstream/65989;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/82017, chr14-CpG: 53/Downstream/66238
Nearby gene
PAPOLA(No orient, 108086)
Upstream sequence
TTGGAGACCCCTGTAAACCAACAGCAGAAAAATGAGATTGCTTTTGATGTTTTAGTTGCAACTATTCTGTGTCAGGTGGGactgcatcatgttaagtatc
Downstream sequence
ccaaactcccacctgctaaatgccaatagcttttgccatccccattattgcaaccatgaaaaatgacctcctaccatttctaaatgccagctattggggc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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