Basic Information
VIS ID
TVIS30011949
Fusion event
HIV-ATP10A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q12
Reference genome
GRCh37/hg19
Start
26050760/25805613 (Hg38)
End
26050760/25805613 (Hg38)
Orient
+
Location type
Intronic
Target gene
ATP10A
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1268a/Upstream/2243482; hsa-mir-10393/Downstream/43134;
Nearest TSS
ENST00000557528/Upstream/110788; ENST00000557558/Downstream/56571;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/69368, chr15-CpG: 142/Downstream/56743
Upstream sequence
TTTGATGGGGAACTGAATGCACTAAAATCTAAGTAGGTCTCAGATAAAAGTCACAGTCTTCAGCCAAACAAACGCAGGTCTCATTCCTCTCTGGCACTTC
Downstream sequence
CTGGGCCCTCAGATTGGAGGGGTGTGTCTGTCTTACATGGGAAGAACATGAAGAAATGCTGAATCCATATGTGAAACACAAAGGCTGTGCTATTTTTTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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