VISDB Viral Integration Site DataBase

VIS ID

TVIS30011952

Fusion event

HIV-SPRED1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q14

Reference genome

Start

End

38551898/38259697 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-126-3p ; hsa-mir-126-5p ; hsa-mir-335-5p ; hsa-mir-375 ; hsa-mir-132-3p ; hsa-mir-103a-3p ; hsa-mir-93-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-7-1-3p ; hsa-mir-7-2-3p ; hsa-mir-15b-5p ; hsa-mir-140-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-545-3p ; hsa-mir-374b-3p ; hsa-mir-4524a-5p ; hsa-mir-4668-3p ; hsa-mir-4796-3p ; hsa-mir-4524b-5p ; hsa-mir-6838-5p ; hsa-mir-8063 ; hsa-mir-379-3p ; hsa-mir-411-3p ; hsa-mir-5011-5p ; hsa-mir-190a-5p ; hsa-mir-190b ; hsa-mir-548t-5p ; hsa-mir-3201 ; hsa-mir-4791 ; hsa-mir-548az-5p ; hsa-mir-520f-3p ; hsa-mir-4804-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-20b-5p ; hsa-mir-520e ; hsa-mir-520a-3p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-519d-3p ; hsa-mir-520d-3p ; hsa-mir-302e ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-1-3p ; hsa-mir-4662a-5p ; hsa-mir-3117-5p ; hsa-mir-425-5p ; hsa-mir-194-5p ; hsa-mir-31-3p ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-4275 ; hsa-mir-4686 ; hsa-mir-6834-3p ; hsa-mir-802 ; hsa-mir-602 ; hsa-mir-486-3p ; hsa-mir-3175 ; hsa-mir-6721-5p ; hsa-mir-6731-5p ; hsa-mir-8085 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-4696 ; hsa-mir-6805-5p ; hsa-mir-451b ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-548e-5p ; hsa-mir-4720-3p ; hsa-mir-380-3p ; hsa-mir-4495 ; hsa-mir-5700 ; hsa-mir-155-5p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-1273e ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-25-5p ; hsa-mir-6499-3p ; hsa-mir-658 ; hsa-mir-4722-5p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6087 ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-6840-3p ; hsa-mir-4695-5p ; hsa-mir-1277-5p ; hsa-mir-1277-3p ; hsa-mir-190a-3p ; hsa-mir-138-1-3p ; hsa-mir-589-3p ; hsa-mir-31-5p

Nearest miRNA

hsa-mir-1233-1/Upstream/1286796; hsa-mir-10393/Downstream/3431888;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/6662, chr15-CpG: 42/Downstream/194376

Upstream sequence

TAAACAAAGGCTATTGGGCTTAAACACCAACTTGATTAGTTCTACAAGGAATATGCTAACAAGATACCAGTCTTTATGCTTTACTTACAGAAGTAAGTTT

Downstream sequence

TTTACTAGGTCACTTATACAAATCAGTAATGTAACACTAGGGGATAACTGTATATTAGTTTAAGAAGTTAACTCAGGTAATGAATTTTGTTATTCTTTAA