VISDB Viral Integration Site DataBase

VIS ID

TVIS30011956

Fusion event

HIV-RAD51 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q15.1

Reference genome

Start

End

41009573/40717375 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-197-3p ; hsa-mir-96-5p ; hsa-mir-193b-3p ; hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-103a-3p ; hsa-mir-92a-1-5p ; hsa-mir-23b-3p ; hsa-mir-155-5p ; hsa-mir-107 ; hsa-mir-221-3p ; hsa-mir-3149 ; hsa-mir-4775 ; hsa-mir-4735-5p ; hsa-mir-6872-3p ; hsa-mir-590-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-921 ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-571 ; hsa-mir-219a-1-3p ; hsa-mir-7854-3p ; hsa-mir-493-3p ; hsa-mir-3192-5p ; hsa-mir-3174 ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-7975 ; hsa-mir-5571-3p ; hsa-mir-4321 ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-770-5p ; hsa-mir-4712-5p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-328-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-378a-5p ; hsa-mir-874-5p ; hsa-mir-4454 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-1224-3p ; hsa-mir-764 ; hsa-mir-6813-3p ; hsa-mir-6847-3p ; hsa-mir-4267 ; hsa-mir-548s ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4684-5p ; hsa-mir-3926 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-3675-3p ; hsa-mir-6771-3p ; hsa-mir-212-5p ; hsa-mir-3934-5p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-498 ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-6514-3p ; hsa-mir-6771-5p ; hsa-mir-7977 ; hsa-mir-891a-3p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-4294 ; hsa-mir-564 ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6746-5p ; hsa-mir-5690 ; hsa-mir-6767-3p ; hsa-mir-34a-5p ; hsa-mir-122-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-377-5p ; hsa-mir-4325 ; hsa-mir-4537 ; hsa-mir-4710 ; hsa-mir-4792 ; hsa-mir-508-5p ; hsa-mir-6086 ; hsa-mir-7703 ; hsa-mir-7847-3p ; hsa-mir-7855-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-1207-5p ; hsa-mir-1228-3p ; hsa-mir-1301-5p ; hsa-mir-1909-3p ; hsa-mir-3160-3p ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-4763-3p ; hsa-mir-558 ; hsa-mir-6499-3p ; hsa-mir-6502-5p ; hsa-mir-6516-5p ; hsa-mir-6722-3p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-1233-1/Upstream/3744474; hsa-mir-10393/Downstream/974210;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/21801, chr15-CpG: 46/Downstream/37637

Upstream sequence

tgtggtgaggcaagatcatgccattgcactccagcctgggcaacaagagcgaaactccgtctcagaaaaaaaagaaagaaaaaaTTTGGTTCTCCTAGGC

Downstream sequence

CTTTAACATAAAATGTTCTAAAGGATTTTCCTCATAATTTAAATGGGAATTATGACTCCAAAGTAGATTTCTAGAGTAGAAATTACCCTTTAGCATCATT