Basic Information
VIS ID
TVIS30011963
Fusion event
HIV-TTBK2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q15.2
Reference genome
GRCh37/hg19
Start
43138709/42846511 (Hg38)
End
43138709/42846511 (Hg38)
Orient
+
Location type
Intronic
Target gene
TTBK2
Nearest miRNA
hsa-mir-1233-1/Upstream/646845; hsa-mir-10393/Downstream/947148;
Nearest TSS
ENST00000557528/Upstream/105763; ENST00000570109/Downstream/61764;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/109090, chr15-CpG: 88/Downstream/73707
Upstream sequence
tctcaaataatacccccacctaggcctcccaaagtgctgagattacagatgtgagccaccatgcccagcctttttcctaatagtttcaatctgtggttgg
Downstream sequence
ttgcatccacagatgtggaatgcatggatgtggaacccactgACAGGAACAACCAACTataatatgaaatatatttagtctctgtccctggtacttgtca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate