Basic Information
VIS ID
TVIS30011967
Fusion event
HIV-SEMA6D integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
47488632/47196435 (Hg38)
End
47488632/47196435 (Hg38)
Orient
-
Location type
Intronic
Target gene
SEMA6D
miRNAs that regulate target gene
hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-130a-5p ; hsa-mir-23c ; hsa-mir-3662 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4506 ; hsa-mir-7-5p ; hsa-mir-5003-5p ; hsa-mir-8485 ; hsa-mir-3529-3p ; hsa-mir-589-3p ; hsa-mir-8068 ; hsa-mir-1225-5p ; hsa-mir-10b-3p ; hsa-mir-1278 ; hsa-mir-1911-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-3182 ; hsa-mir-361-5p ; hsa-mir-3617-3p ; hsa-mir-374a-3p ; hsa-mir-4303 ; hsa-mir-4490 ; hsa-mir-452-5p ; hsa-mir-4659a-3p ; hsa-mir-4659b-3p ; hsa-mir-4676-3p ; hsa-mir-4682 ; hsa-mir-513a-5p ; hsa-mir-6736-3p ; hsa-mir-892c-3p ; hsa-mir-4433a-3p ; hsa-mir-4433b-3p ; hsa-mir-4496 ; hsa-mir-4722-5p ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-6165
Nearest miRNA
hsa-mir-10393/Upstream/1763306; hsa-mir-11181/Downstream/1972635;
Nearest TSS
ENST00000557528/Upstream/10772; ENST00000560636/Downstream/142632;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/11133, chr15-CpG: 129/Downstream/520786
Upstream sequence
CTGCAGAGAGGCTTTCTGAGCCACTGTCTGATAGAAGGGGCTGCAACATTTTGGATATTATATCCCTTGGGAGACCTCCTGGAGGACATTTGTGTGCCAA
Downstream sequence
AAGAGATCTTTGGTAGAACTCTTTAAAGAGGAAAAAAGACAGCCCCCCTAAAATATGGGGAAATTGAGCAGTTTTAACGTTTTTTCAGAAATTTGGTTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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