Basic Information
VIS ID
TVIS30011969
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
52014310/51722113 (Hg38)
End
52014310/51722113 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/408004; hsa-mir-11181/Downstream/555004;
Nearest TSS
ENST00000557528/Upstream/6893; ENST00000561300/Downstream/16008;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/40472, chr15-CpG: 101/Downstream/14920
Nearby gene
LYSMD2(No orient, 951)
Upstream sequence
ACTCTCAAATTTCAGAACATTTTATGTTAAATAGCATGATAACTCTACATTTTTAATGGTTCCTAGGCCACCACAGATGTTTGTTTGAACCTTTTCTTAC
Downstream sequence
ATACATACCTGTTTTCCTTCCCTTATTTTTTTTCATTTAGGTCTCTCTTCATCCAACTAACTCCCCACAGTTCAGGTAGTGAATACAAGAAAACAGCAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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