Basic Information
VIS ID
TVIS30011975
Fusion event
HIV-RORA-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
60814745/60522546 (Hg38)
End
60814745/60522546 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA15A
Target gene
RORA-AS1
Nearest miRNA
hsa-mir-10393/Upstream/1351284; hsa-mir-11181/Downstream/1782112;
Nearest TSS
ENST00000557528/Upstream/2485; ENST00000560280/Downstream/7427;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/43187, chr15-CpG: 200/Downstream/68553
Upstream sequence
tgcctgtaatcccaatactttgagaggctgaggcaggaagGTGATggcccaatgcagtggctcatgcctgtaatcccaatactttgagaggctgaggcag
Downstream sequence
gaggatcacttgaggccaggtgttcgagaccagcctgggcaacatagaccctgtctctacaggaaataaaacaattagccaggtgtagtggcatgtgctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate