VISDB Viral Integration Site DataBase

VIS ID

TVIS30012003

Fusion event

HIV-KIF23 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q23

Reference genome

Start

End

69716216/69423877 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-424-5p ; hsa-mir-373-3p ; hsa-mir-106b-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-16-5p ; hsa-mir-25-3p ; hsa-mir-20a-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-4799-5p ; hsa-mir-340-5p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-4660 ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-3163 ; hsa-mir-646 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-3121-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-106a-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-503-5p ; hsa-mir-15a-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-6874-3p ; hsa-mir-5584-3p ; hsa-mir-3168 ; hsa-mir-148b-5p ; hsa-mir-6818-5p ; hsa-mir-147a ; hsa-mir-183-3p ; hsa-mir-1257 ; hsa-mir-581 ; hsa-mir-6500-3p

Nearest miRNA

hsa-mir-10393/Upstream/621952; hsa-mir-11181/Downstream/655495;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/8864, chr15-CpG: 72/Downstream/28833

Upstream sequence

TTAATATGGTATGATATCTGCACTGTAATTCCATCAGAGTTGAAATACTACTTCCTAGATTTCCTTGGGTCTTGCCTTTCTGAGACGTAAGACTGGTTAC

Downstream sequence

CACTTGGCATCACAAATGATAAATCTGCATTTGTGCCAGAGTTGACCCTGGGATCTTATGTTTAATATTAGTATCTTGTTCCTGAGTTGATGGTTTTGTT