Basic Information
VIS ID
TVIS30012005
Fusion event
HIV-MYO9A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
GRCh37/hg19
Start
72206790/71914449 (Hg38)
End
72206790/71914449 (Hg38)
Orient
+
Location type
Intronic
Target gene
MYO9A
miRNAs that regulate target gene
hsa-mir-128-3p ; hsa-mir-101-3p ; hsa-mir-27a-3p ; hsa-mir-21-5p ; hsa-mir-615-3p ; hsa-let-7c-5p ; hsa-let-7a-5p
Nearest miRNA
hsa-mir-10393/Upstream/1834981; hsa-mir-11181/Downstream/672768;
Nearest TSS
ENST00000557528/Upstream/15611; ENST00000568391/Downstream/24562;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/102371, chr15-CpG: 112/Downstream/203072
Upstream sequence
atagcagaagggcaattcctataccaattaatccTTTGTGAGTTCTATGGTATCATTTTCATGAAAATAAGCATTCAAGGAAGGGCACAAAGACGGCTGG
Downstream sequence
GTGCCATCCATTTTGACTACCTGCAATTTGGTCATCTGTTActtggtttcctcacctttataataagtataatagtaattatcctagaataattggagaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate