Basic Information
VIS ID
TVIS30012012
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
75210471/74918130 (Hg38)
End
75210471/74918130 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/77423; hsa-mir-11181/Downstream/435481;
Nearest TSS
ENST00000557528/Upstream/11009; ENST00000568119/Downstream/19646;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/10977, chr15-CpG: 91/Downstream/19311
Nearby gene
COX5A(No orient, 2146)
Upstream sequence
tgtgtcagagcaagacagtctcaaaacaaaacaaaaacacattaaaaaaaaaaaaaaaAGCAAAGGCAACAAGAATCACTTTCCATCTACTAGTTCTATC
Downstream sequence
CAGCTACAAATAAATCTTCTGCTTGTAAAAGAAAAGCCAATGCCTCAACCCTCACCATCTTTCAAATCACTCTCATTGCCTAAGATCACTCCTTCGCCTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate