VISDB Viral Integration Site DataBase

VIS ID

TVIS30012013

Fusion event

HIV-SIN3A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q24.2

Reference genome

Start

End

75708611/75416270 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-455-3p ; hsa-mir-93-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-218-5p ; hsa-mir-210-3p ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-6796-5p ; hsa-mir-6759-5p ; hsa-mir-4322 ; hsa-mir-4296 ; hsa-mir-4265 ; hsa-mir-4668-5p ; hsa-mir-4267 ; hsa-mir-4762-5p ; hsa-mir-5586-5p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-548c-3p ; hsa-mir-1343-5p ; hsa-mir-149-3p ; hsa-mir-3150a-3p ; hsa-mir-3151-5p ; hsa-mir-3175 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4519 ; hsa-mir-4728-5p ; hsa-mir-491-5p ; hsa-mir-5190 ; hsa-mir-591 ; hsa-mir-6081 ; hsa-mir-6731-5p ; hsa-mir-6742-5p ; hsa-mir-6763-5p ; hsa-mir-6785-5p ; hsa-mir-6825-5p ; hsa-mir-6856-5p ; hsa-mir-6883-5p ; hsa-mir-8085 ; hsa-mir-939-5p

Nearest miRNA

hsa-mir-10393/Upstream/62585; hsa-mir-11181/Downstream/345945;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/47551, chr15-CpG: 401/Downstream/34470

Upstream sequence

TTATCGCACACAGAACACTTCATTGTTGTTTTGGTGGGAAGGATCACAGGTCACTAATAGAATGTCTTTGAAGCTGGACTGACGTGGGGAAAACACCTTT

Downstream sequence

CCCTTCTAGTTTTGAGAGACTTCCTCTTGGCTTATAGAAGAAATTCCCTGACTTTATTTACTTAtttatttagagacagagttttgctattgttgcccag