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TVIS30012015
Basic Information
VIS ID
TVIS30012015
Fusion event
HIV-SIN3A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
75735014/75442673 (Hg38)
End
75735014/75442673 (Hg38)
Orient
+
Location type
Intronic
Target gene
SIN3A
miRNAs that regulate target gene
hsa-mir-155-5p
;
hsa-mir-1-3p
;
hsa-mir-455-3p
;
hsa-mir-93-3p
;
hsa-mir-92b-3p
;
hsa-mir-92a-3p
;
hsa-mir-218-5p
;
hsa-mir-210-3p
;
hsa-mir-5010-3p
;
hsa-mir-2113
;
hsa-mir-6796-5p
;
hsa-mir-6759-5p
;
hsa-mir-4322
;
hsa-mir-4296
;
hsa-mir-4265
;
hsa-mir-4668-5p
;
hsa-mir-4267
;
hsa-mir-4762-5p
;
hsa-mir-5586-5p
;
hsa-mir-208b-5p
;
hsa-mir-208a-5p
;
hsa-mir-548c-3p
;
hsa-mir-1343-5p
;
hsa-mir-149-3p
;
hsa-mir-3150a-3p
;
hsa-mir-3151-5p
;
hsa-mir-3175
;
hsa-mir-4447
;
hsa-mir-4472
;
hsa-mir-4519
;
hsa-mir-4728-5p
;
hsa-mir-491-5p
;
hsa-mir-5190
;
hsa-mir-591
;
hsa-mir-6081
;
hsa-mir-6731-5p
;
hsa-mir-6742-5p
;
hsa-mir-6763-5p
;
hsa-mir-6785-5p
;
hsa-mir-6825-5p
;
hsa-mir-6856-5p
;
hsa-mir-6883-5p
;
hsa-mir-8085
;
hsa-mir-939-5p
Nearest miRNA
hsa-mir-10393/Upstream/88988; hsa-mir-11181/Downstream/319542;
Nearest TSS
ENST00000557528/Upstream/52852;
ENST00000566036/Downstream/8864;
Nearest CpG islands
None/Target,
chr15-CpG: 55/Upstream/73954
,
chr15-CpG: 401/Downstream/8067
Upstream sequence
tttaaatccagcctgggcaacatagtgagatagatcccatctttaaaaaaaaaaaaaaaaaaaaaaaaaTTCACCgctgggcatggtggctcacgactgt
Downstream sequence
aatcccagcactttgggaggccaaggcaggtggatcacctgaggttgggagttcaagaccagcctgaccaacatggagaaaccccatcttttactaaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Resting CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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