VISDB Viral Integration Site DataBase

VIS ID

TVIS30012016

Fusion event

HIV-PTPN9 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q24.2

Reference genome

Start

End

75845270/75552929 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-769-5p ; hsa-mir-186-5p ; hsa-mir-124-3p ; hsa-mir-24-3p ; hsa-mir-93-3p ; hsa-mir-320a ; hsa-mir-183-5p ; hsa-mir-100-5p ; hsa-mir-8064 ; hsa-mir-8485 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-96-5p ; hsa-mir-1207-5p ; hsa-mir-1229-5p ; hsa-mir-1262 ; hsa-mir-1293 ; hsa-mir-197-5p ; hsa-mir-211-3p ; hsa-mir-3132 ; hsa-mir-363-5p ; hsa-mir-4483 ; hsa-mir-4514 ; hsa-mir-4690-5p ; hsa-mir-4692 ; hsa-mir-4701-3p ; hsa-mir-4763-3p ; hsa-mir-6736-5p ; hsa-mir-6741-5p ; hsa-mir-6745 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6783-5p ; hsa-mir-6808-5p ; hsa-mir-6824-5p ; hsa-mir-6893-5p ; hsa-mir-7845-5p ; hsa-mir-92a-1-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-10393/Upstream/199244; hsa-mir-11181/Downstream/209286;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/72106, chr15-CpG: 118/Downstream/25532

Upstream sequence

AAGGGCACTGGGTCATGCTGACCATACAGAAGGAGGGCCTTTAGCTAAGAGAACAAATATATGGTAAAAATAGAACACAAATCCAAAAGATCAAAACTGG

Downstream sequence

ATggtgcaatgggctagaatggtactaaaaagcaacggcctttagagtcagacagccaagggtttgtattccagattctatcactcactgtttagaatcc