VISDB Viral Integration Site DataBase

VIS ID

TVIS30012020

Fusion event

HIV-TSPAN3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr15

Cytoband

q24.3

Reference genome

Start

End

77347932/77055590 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-197-3p ; hsa-mir-155-5p ; hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-484 ; hsa-mir-15b-5p ; hsa-let-7f-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-5589-3p ; hsa-mir-6802-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-6815-5p ; hsa-mir-6865-5p ; hsa-mir-196b-5p ; hsa-mir-196a-5p ; hsa-mir-562 ; hsa-mir-337-3p ; hsa-mir-4671-3p ; hsa-mir-5689 ; hsa-mir-4528 ; hsa-mir-497-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-3129-5p ; hsa-mir-199b-3p ; hsa-mir-199a-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-323a-3p ; hsa-mir-483-3p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-340-5p

Nearest miRNA

hsa-mir-10393/Upstream/1293275; hsa-mir-11181/Downstream/2154198;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/23172, chr15-CpG: 108/Downstream/14808

Upstream sequence

CTCATATAGGCAATCTGTGTGCTGAGGAAATCTGAACAAACTTCTCAGCTAATTATTCATTTGCAGCTATAAATACCTATAATCAAGAACAATACATATA

Downstream sequence

TAACACTCTGCTATATTAAATGAGGTAAGGAGTCTTGACATGTAAATATTTGCCAATTAACTTTAGATATTTGAAATACAGATTAAACAAGTAAGGCAAA