Basic Information
VIS ID
TVIS30012024
Fusion event
HIV-SEC11A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
85241194/84697963 (Hg38)
End
85241194/84697963 (Hg38)
Orient
+
Location type
Intronic
Target gene
SEC11A
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-30a-5p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-484
Nearest miRNA
hsa-mir-10393/Upstream/1630548; hsa-mir-11181/Downstream/682633;
Nearest TSS
ENST00000557528/Upstream/12079; ENST00000559607/Downstream/18100;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/39476, chr15-CpG: 84/Downstream/17645
Upstream sequence
TGAATAGCCTTATTATTTTTTCTAAGAAATGACCAGAACAATATTTCTTCAATGCTCAAGGTGAAACTAGAAAAGAATGATATCAAAGTTCTATATAATA
Downstream sequence
TCTCTCAGCAGCTGTGATATAGGGATTTGTGTTTACTATTCTTTTTTTTCTTTTTAGGAAGTATTGTGTAGAGCCTTCCCCCAAACTCCTGTGACTAGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate