Basic Information
VIS ID
TVIS30012030
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
89419440/88876209 (Hg38)
End
89419440/88876209 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/264275; hsa-mir-1302-10/Downstream/450530;
Nearest TSS
ENST00000557528/Upstream/2496; ENST00000565938/Downstream/19304;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/72237, chr15-CpG: 22/Downstream/5189
Nearby gene
ACAN(No orient, 855)
Upstream sequence
ctgaggcaggagaattgcttgaacccggcaggtggaggttgcagtgagccgtgagccaagatcgcaccactgcattccagcctgggcaacagagcaagac
Downstream sequence
tctgtcaaaaaaataaaaaataaataaaaaataaaaaaaGTACACTGTAGAATAGCAATGAAAACAATTCTAATTGTTTACGGATTCCCCTGACAAACCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate