Basic Information
VIS ID
TVIS30012037
Fusion event
HIV-CRTC3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
91100003/90556771 (Hg38)
End
91100003/90556771 (Hg38)
Orient
-
Location type
Intronic
Target gene
CRTC3
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-7-5p ; hsa-mir-671-5p ; hsa-mir-92a-3p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-514b-3p ; hsa-mir-514a-3p ; hsa-mir-29b-2-5p ; hsa-mir-6079 ; hsa-mir-6828-5p ; hsa-mir-4772-5p ; hsa-mir-4487 ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-29b-1-5p ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-708-5p ; hsa-mir-3139 ; hsa-mir-28-5p ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-383-5p ; hsa-mir-6768-5p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p
Nearest miRNA
hsa-mir-10393/Upstream/549930; hsa-mir-1302-10/Downstream/2347628;
Nearest TSS
ENST00000557528/Upstream/17154; ENST00000561290/Downstream/36941;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/26027, chr15-CpG: 72/Downstream/108317
Upstream sequence
TTGAAAATGGACagcttttgtgaaaatcaaaagggccattaatttatggtatacaattatgcacagaaaatctacagccgtcagagaaatatgactcaag
Downstream sequence
aaaatactgagagttgatatagatactttcatattaaaatagaaggtttacaacggtctACTACTTTTCAATGACTACTTTCTAATTGCTTAATAGTATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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