Basic Information
VIS ID
TVIS30012039
Fusion event
HIV-LINC01578 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
End
93435136/92891906 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
Nearest miRNA
hsa-mir-10393/Upstream/2885065; hsa-mir-1302-10/Downstream/12493;
Upstream sequence
AGAGAGGAGCCAAATTTGTGATACTCAAGAGCTTGTATGATTTCTGCTTGGACTGTATTGTTAATACATACATACATCTTTTGGTCTATTGGCAAATGAC
Downstream sequence
CCTTGCAAGATGTTGACATTTTGGGTATAAATCATGGTGCTTAATAATCTGTTTTCATTTTTTATGTATAAAATTAAATTCTTTTTGTCCTCTGCAGAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate