Fusion event
HIV-LINC01578 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
93435136/92891906 (Hg38)
Location type
ncRNA_intronic
Nearest miRNA
hsa-mir-10393/Upstream/2885065; hsa-mir-1302-10/Downstream/12493;
Upstream sequence
AGAGAGGAGCCAAATTTGTGATACTCAAGAGCTTGTATGATTTCTGCTTGGACTGTATTGTTAATACATACATACATCTTTTGGTCTATTGGCAAATGAC
Downstream sequence
CCTTGCAAGATGTTGACATTTTGGGTATAAATCATGGTGCTTAATAATCTGTTTTCATTTTTTATGTATAAAATTAAATTCTTTTTGTCCTCTGCAGAAA
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.