Basic Information
VIS ID
TVIS30012042
Fusion event
HIV-MCTP2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
94819518/94276289 (Hg38)
End
94819518/94276289 (Hg38)
Orient
-
Location type
Intronic
Target gene
MCTP2
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-10393/Upstream/1371814; hsa-mir-1302-10/Downstream/2056972;
Nearest TSS
ENST00000557528/Upstream/44567; ENST00000557505/Downstream/21977;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/44539, chr15-CpG: 70/Downstream/568483
Nearby gene
MCTP2(No orient, 21912)
Upstream sequence
GTATTCTATGCCAGAAAAAATAATACTAAAAATAATAGGGACATATTCATAAACAGGACAGAGATTAAAACAGCAatataatgaaattttatgttggtat
Downstream sequence
gtttacagtcctagataaaaatctatacttttctaaaaaatatggaacttattaaactaatacaagatgtaaaaaacctaaatgagtttaaaaccaatga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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