Basic Information
VIS ID
TVIS30012045
Fusion event
HIV-chr15 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
98261098/97717868 (Hg38)
End
98261098/97717868 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/1384561; hsa-mir-1302-10/Downstream/1066558;
Nearest TSS
ENST00000557528/Upstream/13846; ENST00000562480/Downstream/156137;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/64707, chr15-CpG: 113/Downstream/242436
Nearby gene
LINC00923(No orient, 24748)
Upstream sequence
TGATGTGCTTATGTCACCTCCTTGGTCTCTTATGCTGCAAAGGTCACCTTGAGAAAAGCATGCCATTGGTAGTTACTGCTCCTTCAGTCTGTCCCCAGAA
Downstream sequence
TGAGATCTGGTAGAGCACACTTGAATCCTCTGATAGCCTGGAGAGTCTGTACTGTCCCTGTAGAGTTACAGCTAGACAATAGACCTGGGAgtgagaaata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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