Basic Information
VIS ID
TVIS30012047
Fusion event
HIV-LOC105371026 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
101661441/101121236 (Hg38)
End
101661441/101121236 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105371026
Nearest miRNA
hsa-mir-10393/Upstream/2336734; hsa-mir-1302-10/Downstream/839223;
Nearest TSS
ENST00000557528/Upstream/4633; ENST00000557903/Downstream/47294;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/31983, chr15-CpG: 218/Downstream/129710
Nearby gene
LRRK1(No orient, 51124)
Upstream sequence
AGGTGCCCATGCCAGACCCAGGTCCTCTGTCCCGGCCGCCGTGCCTGGCAGCCGCTGATGAGCCCAGCGTGAGGCCGGTGAGCTGGGCCAGGTGGGGAGG
Downstream sequence
TGGCGCGGGCCAGGCAGGGAGACTGGGAAAGGAGGGCTTCGGGCGTCTCCGTGACGAGCTGTGGTTGCAGGCTGGCCTGGCTCCCAGCGTGGCCCCCCAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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