Basic Information
VIS ID
TVIS30012052
Fusion event
HIV-chr16 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1050568/1000568 (Hg38)
End
1050568/1000568 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3176/Upstream/230291; hsa-mir-11401/Downstream/734417;
Nearest TSS
ENST00000527434/Upstream/2661; ENST00000564390/Downstream/358;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/2498, chr16-CpG: 18/Downstream/6277
Nearby gene
SOX8(No orient, 13589)
Upstream sequence
ATTTGCACCTGGACTCGGAAAGCTCATTTGGACACAGAAGCCGTTTCTCCCCAGGAGATTTGATTTTCCCTGGAATGCCAGCAGGAAAGTCGGTGGGAAG
Downstream sequence
CCAGGTTGGGGGTGTGGGAGGGCAAGCAGAGCGGGGGTGCGGGGAACAGGTGCCCCCGGCTCTGTGCAGTGGCTGTGGGTCCTGGGCTCCTCACTCAGCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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