Basic Information
VIS ID
TVIS30012055
Fusion event
HIV-SPSB3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1828015/1778014 (Hg38)
End
1828015/1778014 (Hg38)
Orient
+
Location type
Exonic
Target gene
SPSB3
Nearest miRNA
hsa-mir-3176/Upstream/42948; hsa-mir-11401/Downstream/312181;
Nearest TSS
ENST00000527434/Upstream/2202; ENST00000568610/Downstream/3495;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/610, chr16-CpG: 189/Downstream/3706
Upstream sequence
TCGGCCCCGCCCCACCCTGGGCCTCACGCACCCGTGTAGGAGAGGCCCCAGCTGTCCTCATCCCTGCCCAGCAGGCTGCAGAACGTGTGGCGGTATTTGT
Downstream sequence
CCAGGTCCACATCCGACGTCCCGATGCCCACCATCTAGGAACAGGGGCCAGGCAGAGGGCGCGGGGCTGGGCTGCCGGAGCCAGGTTCCCCAGAAGCACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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